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1st INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY

AlCoB 2014

Tarragona, Spain

July 1-3, 2014

Organized by:

Research Group on Mathematical Linguistics (GRLMC) Rovira i Virgili University

http://grammars.grlmc.com/alcob2014/

AIMS:

AlCoB aims at promoting and displaying excellent research using string and graph algorithms and combinatorial optimization to deal with problems in biological sequence analysis, genome rearrangement, evolutionary trees, and structure prediction.

The conference will address several of the current challenges in computational biology by investigating algorithms aimed at: 1) assembling sequence reads into a complete genome, 2) identifying gene structures in the genome, 3) recognizing regulatory motifs, 4) aligning nucleotides and comparing genomes, 5) reconstructing regulatory networks of genes, and 6) inferring the evolutionary phylogeny of species.

Particular focus will be put on methodology and significant room will be reserved to young scholars at the beginning of their career.

VENUE:

AlCoB 2014 will take place in Tarragona, located 90 kms. to the south of Barcelona. The venue will be the Catalunya Campus.

SCOPE:

Topics of either theoretical or applied interest include, but are not limited to:

Exact sequence analysis Approximate sequence analysis Pairwise sequence alignment Multiple sequence alignment Sequence assembly Genome rearrangement Regulatory motif finding Phylogeny reconstruction Phylogeny comparison Structure prediction Compressive genomics Proteomics: molecular pathways, interaction networks ... Transcriptomics: splicing variants, isoform inference and quantification, differential analysis … Next-generation sequencing: population genomics, metagenomics, metatranscriptomics ... Microbiome analysis Systems biology

STRUCTURE:

AlCoB 2014 will consist of:

invited talks invited tutorials peer-reviewed contributions

INVITED SPEAKERS:

Michael Galperin (National Center for Biotechnology Information, Bethesda), Comparative Genomics Approaches to Identifying Functionally Related Genes

Uwe Ohler (Max-Delbrück Centre for Molecular Medicine, Berlin), Decoding Non-coding Regulatory Regions in DNA and RNA (tutorial)

Jason Papin (University of Virginia, Charlottesville), Network Analysis of Microbial Pathogens

PROGRAMME COMMITTEE:

Tatsuya Akutsu (Kyoto, JP) Amihood Amir (Ramat-Gan, IL) Alberto Apostolico (Atlanta, US) Joel Bader (Baltimore, US) Pierre Baldi (Irvine, US) Serafim Batzoglou (Stanford, US) Bonnie Berger (Cambridge, US) Francis Y.L. Chin (Hong Kong, HK) Benny Chor (Tel Aviv, IL) Keith A. Crandall (Washington, US) Bhaskar DasGupta (Chicago, US) Joaquín Dopazo (Valencia, ES) Liliana Florea (Baltimore, US) Olivier Gascuel (Montpellier, FR) David Gilbert (Uxbridge, UK) Gaston H. Gonnet (Zurich, CH) Roderic Guigó (Barcelona, ES) Dan Gusfield (Davis, US) Vasant Honavar (University College, US) Sorin Istrail (Providence, US) Tao Jiang (Riverside, US) Inge Jonassen (Bergen, NO) Anders Krogh (Copenhagen, DK) Giovanni Manzini (Alessandria, IT) Carlos Martín-Vide (Tarragona, ES, chair) Satoru Miyano (Tokyo, JP) Burkhard Morgenstern (Göttingen, DE) Shinichi Morishita (Tokyo, JP) Cédric Notredame (Barcelona, ES) Graziano Pesole (Bari, IT) Mark Ragan (Brisbane, AU) Timothy Ravasi (Thuwal, SA) Allen G. Rodrigo (Durham, US) Steven Salzberg (Baltimore, US) David Sankoff (Ottawa, CA) Thomas Schiex (Toulouse, FR) João C. Setubal (São Paulo, BR) Steven Skiena (Stony Brook, US) Peter F. Stadler (Leipzig, DE) Wing-Kin Sung (Singapore, SG) Alfonso Valencia (Madrid, ES) Jacques van Helden (Marseille, FR) Arndt von Haeseler (Vienna, AT) Lusheng Wang (Hong Kong, HK) Limsoon Wong (Singapore, SG) Xiaohui Xie (Irvine, US) Dong Xu (Columbia, US) Zohar Yakhini (Santa Clara, US) Alex Zelikovsky (Atlanta, US) Michael Q. Zhang (Dallas, US)

ORGANIZING COMMITTEE:

Adrian Horia Dediu (Tarragona) Carlos Martín-Vide (Tarragona, chair) Bianca Truthe (Magdeburg) Florentina Lilica Voicu (Tarragona)

SUBMISSIONS:

Authors are invited to submit non-anonymized papers in English presenting original and unpublished research. Papers should not exceed 12 single-spaced pages (including eventual appendices) and should be formatted according to the standard format for Springer Verlag's LNCS series (see http://www.springer.com/computer/lncs?SGWID=0-164-6-793341-0).

Submissions have to be uploaded to:

https://www.easychair.org/conferences/?conf=alcob2014

PUBLICATIONS:

A volume of proceedings published by Springer in the LNCS/LNBI series will be available by the time of the conference.

A special issue of IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB, 2012 impact factor: 1.616) will be later published containing peer-reviewed extended versions of some of the papers contributed to the conference. Submissions to it will be by invitation.

REGISTRATION:

The period for registration is open from September 21, 2013 to July 1, 2014. The registration form can be found at:

http://grammars.grlmc.com/alcob2014/Registration.php

DEADLINES:

Paper submission: February 4, 2014 (23:59 CET) Notification of paper acceptance or rejection: March 15, 2014 Final version of the paper for the LNCS/LNBI proceedings: March 22, 2014 Early registration: March 29, 2014 Late registration: June 17, 2014 Starting of the conference: July 1, 2014 End of the conference: July 3, 2014 Submission to the post-conference TCBB special issue: October 3, 2014

QUESTIONS AND FURTHER INFORMATION:

florentinalilica.voicu(a)urv.cat

POSTAL ADDRESS:

AlCoB 2014 Research Group on Mathematical Linguistics (GRLMC) Rovira i Virgili University Av. Catalunya, 35 43002 Tarragona, Spain

Phone: +34 977 559543 Fax: +34 977 558386

ACKNOWLEDGEMENTS:

Departament d’Economia i Coneixement, Generalitat de Catalunya Universitat Rovira i Virgili